pynrc.reduce.ref_pixels.NRC_refs¶
- class pynrc.reduce.ref_pixels.NRC_refs(data, header, DMS=False, altcol=True, do_all=False, **kwargs)[source]¶
Bases:
object
Reference pixel correction object
Object class for reference pixel correction of NIRCam data (single integration). Specify the data cube, header, and whether or not the header is in DMS format.
General usage of functions:
Create instance:
ref = NRC_refs(data, header)
Determine reference offset values:
ref.calc_avg_amps()
. Stored atref.refs_amps_avg
.Fix amplifier offsets:
ref.correct_amp_refs()
. Removes offsets that are stored atref.refs_amps_avg
.Determine average of column references tracking 1/f noise:
ref.calc_avg_cols()
. Reference values offset for a mean value of 0. Averages are stored atref.refs_side_avg
.Optimal smoothing of side reference values:
ref.calc_col_smooth()
. Stores smoothed version atref.refs_side_smth
.Remove approximation of 1/f noise:
ref.correct_col_refs()
.
- Parameters
data (ndarray) – Input datacube. Can be two or three dimensions (nz,ny,nx).
header (obj) – NIRCam Header associated with data.
DMS (bool) – Is the header in DMS format?
altcol (bool) – Calculate separate reference values for even/odd columns? Default=True.
do_all (bool) – Perform the default pixel correction procedures.
Methods
__init__
(data, header[, DMS, altcol, do_all])calc_avg_amps
([top_ref, bot_ref])Calculate amplifier averages
calc_avg_cols
([left_ref, right_ref, avg_type])Calculate average of column references
calc_col_smooth
([perint, edge_wrap, savgol])Optimal smoothing of side reference pixels
correct_amp_refs
([supermean])Correct amplifier offsets
Remove 1/f noise from data
Attributes
A
multiaccum
objectExposure timings in dictionary
Return raw bottom reference values
Return raw left reference values
Return raw right reference values
Return raw top reference values
- calc_avg_amps(top_ref=True, bot_ref=True)[source]¶
Calculate amplifier averages
Save the average reference value for each amplifier in each frame. Each array has a size of (namp, ngroup). Average values are saved at
self.refs_amps_avg
.- Parameters
top_ref (bool) – Include top reference rows when correcting channel offsets.
bot_ref (bool) – Include bottom reference rows when correcting channel offsets.
- calc_avg_cols(left_ref=True, right_ref=True, avg_type='frame', **kwargs)[source]¶
Calculate average of column references
Create a copy of the left and right reference pixels, removing the average value of the reference pixels on an int, frame, or pixel basis. Do this after correcting the amplifier offsets with
correct_amp_refs()
. Averages are stored inself.refs_side_avg
.- Parameters
left_ref (bool) – Include left reference cols when correcting 1/f noise.
right_ref (bool) – Include right reference cols when correcting 1/f noise.
avg_type (str) – Type of ref col averaging to perform. Allowed values are ‘pixel’, ‘frame’, or ‘int’.
mean_func (func) – Function to use to calculate averages of reference columns
- calc_col_smooth(perint=False, edge_wrap=False, savgol=False, **kwargs)[source]¶
Optimal smoothing of side reference pixels
Geneated smoothed version of column reference values. Uses
calc_avg_cols()
to determine approx 1/f noise in data and store inself.refs_side_smth
.- Parameters
perint (bool) – Smooth side reference pixel per int, otherwise per frame.
edge_wrap (bool) – Add a partial frames to the beginning and end of each averaged time series pixels in order to get rid of edge effects.
- correct_amp_refs(supermean=False)[source]¶
Correct amplifier offsets
Use values in
self.refs_amps_avg
to correct amplifier offsets.- Parameters
supermean (bool) – Add back the overall mean of the reference pixels.
- correct_col_refs()[source]¶
Remove 1/f noise from data
Correct 1/f noise using the approximation stored in
self.refs_side_smth
.
- property multiaccum¶
A
multiaccum
object
- property multiaccum_times¶
Exposure timings in dictionary
- property refs_bot¶
Return raw bottom reference values
- property refs_left¶
Return raw left reference values
- property refs_right¶
Return raw right reference values
- property refs_top¶
Return raw top reference values